Scott Christian University has a Student Council is an elected annually by the student body to oversee and plan student activities that promote spiritual and social well-being. Through example and words, these student leaders seek to promote harmonious community living. Every year members of the Student Council are elected by the student body during the second semester to serve a term of one year. These ten to fifteen students have specified rolls that cover all aspects of student life from library services to hostel living.

The Dean of Students acts as adviser to the Student Council. The Student Council is concerned with all areas of student welfare, thus where appropriate it brings student needs to the attention of the relevant University authority and provides input to the Academic Council on matters related to the wellbeing of students.

Scott Christian University is enriched by verse diversity i.e. multi-cultural among the students population. Thus, the university seeks to ensure there is peaceful co-existence among the students through an annual cultural night which is usually organized to show case the different cultures and enhance integration among the students. Countries represented include; Kenya, Tanzania, Ghana, South Sudan, Rwanda among other nations.